If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 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'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ), 'gf_id' => 'HOM05D000941', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000941' ), 'data_identifier' => 'HOM05D000941', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000941', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '642', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p24420' => 'bna', 'A03p33050' => 'bna', 'A05p03930' => 'bna', 'A05p45230' => 'bna', 'A10p22820' => 'bna', 'A10p22830' => 'bna', 'Aa31LG11G13380' => 'aar', 'Aa31LG1G25420' => 'aar', 'Aa31LG5G13110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5097' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.274' => 'aag', 'Actinidia11442' => 'ach', 'Actinidia19644' => 'ach', 'Actinidia27117' => 'ach', 'Actinidia27118' => 'ach', 'Actinidia27119' => 'ach', 'Actinidia28976' => 'ach', 'Actinidia28977' => 'ach', 'Ah.04g159320' => 'amhyb', 'Ah.06g195240' => 'amhyb', 'Ah.13g073430' => 'amhyb', 'AL1G52030' => 'aly', 'AL3G11990' => 'aly', 'AL3G12000' => 'aly', 'AL4G42540' => 'aly', 'AL6G27120' => 'aly', 'AL6G27130' => 'aly', 'Aqoxy2G04155' => 'aox', 'arahy.Tifrunner.gnm1.ann1.072NVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1R1L75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7G97IV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J26PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9C266U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BR0SNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E24IL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H654N0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JF7GVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KNYU1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN8HKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XVN2S5' => 'arhy', 'AT1G43800' => 'ath', 'AT2G43710' => 'ath', 'AT3G02610' => 'ath', 'AT3G02620' => 'ath', 'AT3G02630' => 'ath', 'AT5G16230' => 'ath', 'AT5G16240' => 'ath', 'ATR0661G355' => 'atr', 'ATR0661G461' => 'atr', 'ATR0661G498' => 'atr', 'ATR0736G096' => 'atr', 'ATR0763G122' => 'atr', 'Atru.chr10.611' => 'acertr', 'Atru.chr13.1709' => 'acertr', 'Atru.chr2.214' => 'acertr', 'Atru.chr4.1449' => 'acertr', 'AUR62000269' => 'cqu', 'AUR62002396' => 'cqu', 'AUR62002405' => 'cqu', 'AUR62002406' => 'cqu', 'AUR62002407' => 'cqu', 'AUR62002408' => 'cqu', 'AUR62006617' => 'cqu', 'AUR62023781' => 'cqu', 'AUR62023782' => 'cqu', 'AUR62023783' => 'cqu', 'AUR62023784' => 'cqu', 'AUR62023785' => 'cqu', 'BcaB01g03366' => 'bca', 'BcaB02g08907' => 'bca', 'BcaB02g08908' => 'bca', 'BcaB04g19394' => 'bca', 'BcaB06g29342' => 'bca', 'BcaB08g36857' => 'bca', 'BcaB08g36858' => 'bca', 'BcaC01g04431' => 'bca', 'BcaC01g05218' => 'bca', 'BcaC02g07156' => 'bca', 'BcaC02g12368' => 'bca', 'BcaC04g18902' => 'bca', 'BcaC04g18903' => 'bca', 'BcaC05g30363' => 'bca', 'BcaC09g47715' => 'bca', 'BNapus_Darmor_BZH_scaffold_122p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_129p00100' => 'bna', 'BNapus_Darmor_BZH_scaffold_99p00120' => 'bna', 'BolC1t05890H' => 'bol', 'BolC3t15263H' => 'bol', 'BolC3t16288H' => 'bol', 'BolC4t22099H' => 'bol', 'BolC5t35079H' => 'bol', 'BolC9t58916H' => 'bol', 'BolC9t58918H' => 'bol', 'BraA03t11651Z' => 'bra', 'BraA03t12475Z' => 'bra', 'BraA03t14775Z' => 'bra', 'BraA05t19381Z' => 'bra', 'BraA05t23138Z' => 'bra', 'BraA10t44349Z' => 'bra', 'BraA10t44350Z' => 'bra', 'BraSC246t45830Z' => 'bra', 'C03p29110' => 'bna', 'C03p40230' => 'bna', 'C04p04690' => 'bna', 'C04p70700' => 'bna', 'C09p60770' => 'bna', 'C09p75750' => 'bna', 'CAN.G115.10' => 'can', 'CAN.G1279.3' => 'can', 'CAN.G136.2' => 'can', 'CAN.G321.4' => 'can', 'CAN.G373.5' => 'can', 'CAN.G833.3' => 'can', 'CANSAT25G0178' => 'cansat', 'CANSAT25G0364' => 'cansat', 'CANSAT25G3191' => 'cansat', 'CANSAT35G0365' => 'cansat', 'CANSAT35G0426' => 'cansat', 'CANSAT35G0872' => 'cansat', 'CANSAT56G3166' => 'cansat', 'CANSAT56G3246' => 'cansat', 'CANSAT64G2034' => 'cansat', 'CARHR035470' => 'chi', 'CARHR076630' => 'chi', 'CARHR138900' => 'chi', 'CARHR197070' => 'chi', 'CARHR197080' => 'chi', 'Carub.0001s3478' => 'cru', 'Carub.0003s0173' => 'cru', 'Carub.0003s0174' => 'cru', 'Carub.0004s2625' => 'cru', 'Carub.0006s1442' => 'cru', 'Carub.0006s1443' => 'cru', 'Ca_12660_v3' => 'car', 'Ca_16650_v3' => 'car', 'Ca_18634_v3' => 'car', 'CBR_g38778' => 'cbr', 'Cc03_g14260' => 'ccan', 'Cc03_g14350' => 'ccan', 'Cc09_g04120' => 'ccan', 'Cc10_g12850' => 'ccan', 'CDE02G1702' => 'cde', 'CDE06G2202' => 'cde', 'CDE08G1511' => 'cde', 'CDE09G1091' => 'cde', 'Cfa006221' => 'cfa', 'Cfa008430' => 'cfa', 'Cfa008475' => 'cfa', 'Cfa008476' => 'cfa', 'Cfa008477' => 'cfa', 'Cfa008480' => 'cfa', 'Cfa008481' => 'cfa', 'Cfa008482' => 'cfa', 'Cfa008485' => 'cfa', 'Cfa008486' => 'cfa', 'Cfa018366' => 'cfa', 'Cfa021322' => 'cfa', 'Ciclev10001415m.g' => 'ccl', 'Ciclev10001443m.g' => 'ccl', 'Ciclev10001456m.g' => 'ccl', 'Ciclev10001459m.g' => 'ccl', 'Ciclev10020487m.g' => 'ccl', 'Ciclev10029890m.g' => 'ccl', 'Ciclev10031784m.g' => 'ccl', 'CiPaw.01G196200' => 'cil', 'CiPaw.01G196300' => 'cil', 'CiPaw.01G196400' => 'cil', 'CiPaw.01G198600' => 'cil', 'CiPaw.02G123100' => 'cil', 'CiPaw.07G084900' => 'cil', 'CiPaw.16G017900' => 'cil', 'CiPaw.16G018000' => 'cil', 'ClCG08G006440' => 'cla', 'ClCG08G017170' => 'cla', 'ClCG08G017190' => 'cla', 'ClCG11G010030' => 'cla', 'COL.COLO4_02743' => 'col', 'COL.COLO4_08382' => 'col', 'COL.COLO4_11030' => 'col', 'COL.COLO4_22922' => 'col', 'COL.COLO4_29980' => 'col', 'COL.COLO4_29981' => 'col', 'COL.COLO4_36485' => 'col', 'Cpa.g.sc49.67' => 'cpa', 'Cpa.g.sc9.373' => 'cpa', 'Cre10.g458183' => 'cre', 'Cre14.g630883' => 'cre', 'Cre17.g701700' => 'cre', 'CsaV3_2G010260' => 'csa', 'CsaV3_2G025420' => 'csa', 'CsaV3_6G030990' => 'csa', 'CSS0000224' => 'camsi', 'CSS0009062' => 'camsi', 'CSS0010236' => 'camsi', 'CSS0015282' => 'camsi', 'CSS0016273' => 'camsi', 'CSS0016770' => 'camsi', 'CSS0025433' => 'camsi', 'CSS0027257' => 'camsi', 'CSS0037909' => 'camsi', 'CSS0039279' => 'camsi', 'CSS0039685' => 'camsi', 'CSS0050071' => 'camsi', 'DCAR_002144' => 'dca', 'DCAR_005457' => 'dca', 'DCAR_027519' => 'dca', 'DCAR_031597' => 'dca', 'Dinv07046' => 'din', 'Dinv07048' => 'din', 'Dinv07050' => 'din', 'Dinv07053' => 'din', 'Dinv17135' => 'din', 'Dinv18327' => 'din', 'Dinv33211' => 'din', 'Dinv41124' => 'din', 'Duzib041G0433' => 'dzi', 'Duzib068G0464' => 'dzi', 'Duzib128G0689' => 'dzi', 'Duzib151G0426' => 'dzi', 'Duzib151G1198' => 'dzi', 'Duzib212G0119' => 'dzi', 'Duzib212G0221' => 'dzi', 'Duzib268G1201' => 'dzi', 'Duzib268G1667' => 'dzi', 'ECA232G2555' => 'eca', 'ECA248G0161' => 'eca', 'ECA248G3263' => 'eca', 'EL10Ac3g06098' => 'bvu', 'EL10Ac3g06101' => 'bvu', 'EL10Ac4g10027' => 'bvu', 'Eucgr.F02743' => 'egr', 'Eucgr.H00294' => 'egr', 'Eucgr.H00295' => 'egr', 'Eucgr.H00296' => 'egr', 'Eucgr.H00297' => 'egr', 'Eucgr.H00298' => 'egr', 'Eucgr.H00300' => 'egr', 'Eucgr.H00301' => 'egr', 'Eucgr.H00304' => 'egr', 'Eucgr.H00305' => 'egr', 'Eucgr.H00306' => 'egr', 'Eucgr.H00307' => 'egr', 'Eucgr.K02579' => 'egr', 'Eucgr.K02580' => 'egr', 'Eucgr.K02583' => 'egr', 'Eucgr.L00008' => 'egr', 'FAN02G4024' => 'fan', 'FAN07G2521' => 'fan', 'FAN12G0560' => 'fan', 'FAN12G3606' => 'fan', 'FAN14G0932' => 'fan', 'FAN15G3595' => 'fan', 'FAN17G1178' => 'fan', 'FAN20G2328' => 'fan', 'FAN22G2059' => 'fan', 'FAN24G0548' => 'fan', 'FvH4_2g14690' => 'fve', 'FvH4_4g10110' => 'fve', 'FvH4_6g00080' => 'fve', 'Glyma.02G138100' => 'gma', 'Glyma.07G207200' => 'gma', 'Glyma.13G038600' => 'gma', 'Glyma.14G121400' => 'gma', 'Gohir.A02G089100' => 'ghi', 'Gohir.A02G107100' => 'ghi', 'Gohir.A05G269600' => 'ghi', 'Gohir.A05G327800' => 'ghi', 'Gohir.A05G328200' => 'ghi', 'Gohir.A07G122600' => 'ghi', 'Gohir.A10G144300' => 'ghi', 'Gohir.A10G144400' => 'ghi', 'Gohir.A10G144500' => 'ghi', 'Gohir.A12G014400' => 'ghi', 'Gohir.D02G110000' => 'ghi', 'Gohir.D03G060500' => 'ghi', 'Gohir.D05G271700' => 'ghi', 'Gohir.D05G327800' => 'ghi', 'Gohir.D05G328200' => 'ghi', 'Gohir.D07G126575' => 'ghi', 'Gohir.D10G122500' => 'ghi', 'Gohir.D10G122600' => 'ghi', 'Gohir.D10G122700' => 'ghi', 'Gorai.001G136700' => 'gra', 'Gorai.003G093900' => 'gra', 'Gorai.005G123300' => 'gra', 'Gorai.009G284600' => 'gra', 'Gorai.009G351900' => 'gra', 'Gorai.009G352200' => 'gra', 'Gorai.011G134800' => 'gra', 'Gorai.011G135100' => 'gra', 'Gorai.011G135200' => 'gra', 'GSVIVG01006059001' => 'vvi', 'GSVIVG01007184001' => 'vvi', 'GSVIVG01010028001' => 'vvi', 'GSVIVG01038149001' => 'vvi', 'GSVIVG01038152001' => 'vvi', 'GSVIVG01038159001' => 'vvi', 'GSVIVG01038162001' => 'vvi', 'GSVIVG01038172001' => 'vvi', 'GSVIVG01038174001' => 'vvi', 'GSVIVG01038175001' => 'vvi', 'HanXRQChr01g0023271' => 'han', 'HanXRQChr11g0343101' => 'han', 'Haze_01475' => 'cav', 'Haze_01476' => 'cav', 'Haze_04612' => 'cav', 'Haze_11180' => 'cav', 'Haze_11183' => 'cav', 'Haze_11187' => 'cav', 'Haze_11193' => 'cav', 'Haze_11195' => 'cav', 'Haze_11197' => 'cav', 'Haze_11198' => 'cav', 'Haze_16188' => 'cav', 'Haze_17703' => 'cav', 'Hma1.2p1_0108F.1_g051750' => 'hma', 'Hma1.2p1_0108F.1_g051760' => 'hma', 'Hma1.2p1_0620F.1_g190480' => 'hma', 'Hma1.2p1_0725F.1_g208830' => 'hma', 'HPP92_000920' => 'vpl', 'HPP92_000921' => 'vpl', 'HPP92_006976' => 'vpl', 'HPP92_006997' => 'vpl', 'HPP92_006998' => 'vpl', 'HPP92_011778' => 'vpl', 'HPP92_014071' => 'vpl', 'HPP92_014079' => 'vpl', 'Hund03207' => 'sun', 'Hund07382' => 'sun', 'Hund07383' => 'sun', 'Hund17396' => 'sun', 'Hund21932' => 'sun', 'Lalb_Chr05g0218861' => 'lal', 'Lalb_Chr09g0328071' => 'lal', 'Lalb_Chr11g0066421' => 'lal', 'Lalb_Chr11g0066431' => 'lal', 'Lalb_Chr16g0384391' => 'lal', 'Lalb_Chr25g0281701' => 'lal', 'Lj1g0027650' => 'lja', 'Lj4g0012905' => 'lja', 'Lj6A221T18' => 'lonja', 'Lj6C209G1' => 'lonja', 'Lj6C209T2' => 'lonja', 'Lj6C210G0' => 'lonja', 'Lj6C210T2' => 'lonja', 'Lj6C220T0' => 'lonja', 'Lj7A364T80' => 'lonja', 'Lju470A17T12' => 'lonja', 'Lju470A17T13' => 'lonja', 'Lsat_1_v5_gn_1_74601' => 'lsa', 'Lsat_1_v5_gn_9_77840' => 'lsa', 'Manes.02G175000' => 'mes', 'Manes.04G034900' => 'mes', 'Manes.04G037800' => 'mes', 'Manes.04G050900' => 'mes', 'Manes.11G128500' => 'mes', 'Manes.12G001500' => 'mes', 'Manes.13G000500' => 'mes', 'Mapoly0024s0114' => 'mpo', 'Mapoly0040s0101' => 'mpo', 'Mapoly0246s0004' => 'mpo', 'MBI03_g11308_MAGBIO' => 'mbi', 'MBI07_g11489_MAGBIO' => 'mbi', 'MBI09_g14018_MAGBIO' => 'mbi', 'MBI09_g17300_MAGBIO' => 'mbi', 'MBI11_g05790_MAGBIO' => 'mbi', 'MCO03G592' => 'mco', 'MD00G1017300' => 'mdo', 'MD04G1048200' => 'mdo', 'MD10G1014800' => 'mdo', 'MD12G1261600' => 'mdo', 'Medtr1g029150' => 'mtr', 'Medtr3g089025' => 'mtr', 'Medtr3g089973' => 'mtr', 'Medtr3g089980' => 'mtr', 'Medtr3g090010' => 'mtr', 'Medtr3g090020' => 'mtr', 'Medtr3g090100' => 'mtr', 'Medtr3g090110' => 'mtr', 'Medtr4g087440' => 'mtr', 'Medtr5g024130' => 'mtr', 'MELO3C008413.2' => 'cme', 'MELO3C008681.2' => 'cme', 'MELO3C010739.2' => 'cme', 'Migut.F01841' => 'egut', 'Migut.F02090' => 'egut', 'Migut.G01169' => 'egut', 'Migut.G01174' => 'egut', 'Migut.N03061' => 'egut', 'Migut.N03062' => 'egut', 'MSTRG.14850' => 'ama', 'MSTRG.22035' => 'ama', 'MSTRG.27414' => 'ama', 'MSTRG.4305' => 'ama', 'MSTRG.9730' => 'ama', 'Nitab4.5_0000270g0300' => 'nta', 'Nitab4.5_0000270g0320' => 'nta', 'Nitab4.5_0000445g0010' => 'nta', 'Nitab4.5_0000445g0050' => 'nta', 'Nitab4.5_0000751g0170' => 'nta', 'Nitab4.5_0001003g0150' => 'nta', 'Nitab4.5_0001308g0160' => 'nta', 'Nitab4.5_0002974g0050' => 'nta', 'Nitab4.5_0002974g0060' => 'nta', 'Nitab4.5_0003482g0030' => 'nta', 'Nitab4.5_0003928g0040' => 'nta', 'Nitab4.5_0004317g0020' => 'nta', 'Nitab4.5_0004700g0040' => 'nta', 'Nitab4.5_0007474g0020' => 'nta', 'Nn1g09547' => 'nnu', 'Nn2g14211' => 'nnu', 'Nn5g28621' => 'nnu', 'Nn6g32342' => 'nnu', 'Nn6g34834' => 'nnu', 'Nn7g37539' => 'nnu', 'Oeu009943.1' => 'oeu', 'Oeu015714.1' => 'oeu', 'Oeu024466.1' => 'oeu', 'Oeu025716.1' => 'oeu', 'Oeu040504.1' => 'oeu', 'Oeu048444.1' => 'oeu', 'Oeu050331.1' => 'oeu', 'Os01g0880800' => 'osa', 'Os01g0919900' => 'osa', 'Os02g0504800' => 'osa', 'Os03g0423300' => 'osa', 'Os03g0741000' => 'osa', 'Os04g0379900' => 'osa', 'Os06g0503800' => 'osa', 'Os06g0503850' => 'osa', 'Os08g0199400' => 'osa', 'Os08g0200100' => 'osa', 'Peaxi162Scf00066g00212' => 'pax', 'Peaxi162Scf00066g02124' => 'pax', 'Peaxi162Scf00253g00061' => 'pax', 'Peaxi162Scf00254g00619' => 'pax', 'Peaxi162Scf00254g00621' => 'pax', 'Peaxi162Scf00263g00228' => 'pax', 'Peaxi162Scf00579g00002' => 'pax', 'Peaxi162Scf00802g00235' => 'pax', 'Peaxi162Scf61466g00001' => 'pax', 'PGR042G0905' => 'pgr', 'PGR042G3466' => 'pgr', 'PGSC0003DMG400000978' => 'stu', 'PGSC0003DMG400005223' => 'stu', 'PGSC0003DMG400016177' => 'stu', 'PGSC0003DMG400016247' => 'stu', 'PGSC0003DMG400016331' => 'stu', 'PGSC0003DMG400030773' => 'stu', 'PGSC0003DMG400030774' => 'stu', 'PGSC0003DMG400030776' => 'stu', 'PGSC0003DMG400044730' => 'stu', 'PGSC0003DMG401030775' => 'stu', 'PGSC0003DMG402030775' => 'stu', 'Phvul.001G063500' => 'pvu', 'Phvul.001G064100' => 'pvu', 'Phvul.003G297200' => 'pvu', 'Phvul.006G006500' => 'pvu', 'Potri.002G209602' => 'ptr', 'Potri.005G187600' => 'ptr', 'Potri.008G077900' => 'ptr', 'Potri.010G179400' => 'ptr', 'Potri.010G179500' => 'ptr', 'Potri.013G127300' => 'ptr', 'Pp3c10_18380' => 'ppa', 'Pp3c12_16620' => 'ppa', 'Pp3c12_3090' => 'ppa', 'Pp3c13_5460' => 'ppa', 'Pp3c3_28120' => 'ppa', 'Pp3c4_21920' => 'ppa', 'Pp3c4_9110' => 'ppa', 'PRCOL_00005280' => 'pco', 'Prupe.1G203700' => 'ppe', 'Prupe.6G365100' => 'ppe', 'Prupe.6G365200' => 'ppe', 'Prupe.8G018700' => 'ppe', 'Psat0s3275g0040' => 'psa', 'Psat5g083080' => 'psa', 'Psat6g040040' => 'psa', 'Psat7g119680' => 'psa', 'PSO017G0878' => 'pso', 'PSO063G7586' => 'pso', 'PSO541G3153' => 'pso', 'PSO573G0003' => 'pso', 'PSO675G1301' => 'pso', 'PSO675G3021' => 'pso', 'PSO782G3999' => 'pso', 'QL02p025336' => 'qlo', 'QL02p083604' => 'qlo', 'QL10p016624' => 'qlo', 'QL10p029761' => 'qlo', 'QL10p056066' => 'qlo', 'QL10p056089' => 'qlo', 'QL10p056167' => 'qlo', 'QL10p056189' => 'qlo', 'QL10p056203' => 'qlo', 'QL10p056259' => 'qlo', 'RcHm_v2.0_Chr2g0124011' => 'rch', 'RcHm_v2.0_Chr3g0447411' => 'rch', 'RcHm_v2.0_Chr4g0405901' => 'rch', 'RcHm_v2.0_Chr6g0277151' => 'rch', 'Rhsim02G0084800' => 'rsi', 'Rhsim02G0084900' => 'rsi', 'Rhsim09G0009000' => 'rsi', 'Rhsim09G0009100' => 'rsi', 'Rhsim09G0009200' => 'rsi', 'Rhsim09G0009300' => 'rsi', 'Rhsim09G0009400' => 'rsi', 'Rhsim09G0154400' => 'rsi', 'Rhsim09G0154500' => 'rsi', 'Sabra05G0143200' => 'sbr', 'Sabra10G0137500' => 'sbr', 'Sabra10G0137600' => 'sbr', 'Sabra10G0137700' => 'sbr', 'Sabra10G0137800' => 'sbr', 'Sabra13G0106300' => 'sbr', 'SalBow1G4070' => 'sbo', 'SalBow3G1341' => 'sbo', 'SalBow3G2123' => 'sbo', 'SalBow3G3822' => 'sbo', 'SalBow6G1416' => 'sbo', 'Sc06g0004910' => 'sci', 'Sc16g0010650' => 'sci', 'Sed0006787' => 'sed', 'Sed0010408' => 'sed', 'Sed0017337' => 'sed', 'Sed0023447' => 'sed', 'SEGI_00586' => 'sgi', 'SEGI_05613' => 'sgi', 'SEGI_08287' => 'sgi', 'SEGI_17892' => 'sgi', 'SEGI_18602' => 'sgi', 'SEGI_21177' => 'sgi', 'SEGI_31152' => 'sgi', 'SEGI_35342' => 'sgi', 'SGA_v2.0_scaffold12G06196' => 'sas', 'SGA_v2.0_scaffold25G11001' => 'sas', 'SGA_v2.0_scaffold340G49314' => 'sas', 'SGA_v2.0_scaffold62G21493' => 'sas', 'SMO012G0035' => 'smo', 'SMO115G0148' => 'smo', 'SMO115G0253' => 'smo', 'SMO115G0328' => 'smo', 'SMO166G0010' => 'smo', 'SMO166G0024' => 'smo', 'SMO166G0037' => 'smo', 'SMO166G0039' => 'smo', 'SMO166G0049' => 'smo', 'SMO166G0068' => 'smo', 'SMO166G0084' => 'smo', 'SMO174G0060' => 'smo', 'SMO356G0063' => 'smo', 'Solyc01g009960.4' => 'sly', 'Solyc03g063110.3' => 'sly', 'Solyc06g034170.1' => 'sly', 'Solyc06g053480.3' => 'sly', 'Solyc06g054670.2' => 'sly', 'Solyc06g054685.1' => 'sly', 'Solyc06g059710.3' => 'sly', 'Solyc06g059720.3' => 'sly', 'Solyc11g008680.2' => 'sly', 'Sopen00g003350' => 'spe', 'Sopen01g005530' => 'spe', 'Sopen03g015430' => 'spe', 'Sopen06g018560' => 'spe', 'Sopen06g019740' => 'spe', 'Sopen06g019760' => 'spe', 'Sopen06g019770' => 'spe', 'Sopen06g019780' => 'spe', 'Sopen11g004460' => 'spe', 'Sp1g32960' => 'spa', 'Sp3g01650' => 'spa', 'Sp3g01660' => 'spa', 'Sp4g25780' => 'spa', 'Sp6g27920' => 'spa', 'Sp6g27930' => 'spa', 'TAR362G0850' => 'tar', 'TAR365G0094' => 'tar', 'TAR365G0916' => 'tar', 'TAR365G0970' => 'tar', 'TAR381G0353' => 'tar', 'TAR381G0432' => 'tar', 'TAR633G0648' => 'tar', 'TAR633G2608' => 'tar', 'THA.LOC104802328' => 'tha', 'THA.LOC104802432' => 'tha', 'THA.LOC104804087' => 'tha', 'THA.LOC104806847' => 'tha', 'THA.LOC104827165' => 'tha', 'Thecc.01G111000' => 'tca', 'Thecc.04G051600' => 'tca', 'Thecc.04G164600' => 'tca', 'Thecc.04G164700' => 'tca', 'Thecc.04G164800' => 'tca', 'Thecc.04G164900' => 'tca', 'Thecc.05G112800' => 'tca', 'Thecc.08G144500' => 'tca', 'Thecc.09G241200' => 'tca', 'Thhalv10001477m.g' => 'esa', 'Thhalv10011783m.g' => 'esa', 'Thhalv10012283m.g' => 'esa', 'Thhalv10013713m.g' => 'esa', 'Thhalv10013733m.g' => 'esa', 'Thhalv10020875m.g' => 'esa', 'TPR.G18762' => 'tpr', 'TPR.G18773' => 'tpr', 'TPR.G20907' => 'tpr', 'TPR.G23534' => 'tpr', 'TPR.G24757' => 'tpr', 'TPR.G33046' => 'tpr', 'TPR.G7265' => 'tpr', 'TWI15G0566' => 'twi', 'TWI18G0865' => 'twi', 'TWI36G1346' => 'twi', 'TWI63G0534' => 'twi', 'unitig_0.g377' => 'ugi', 'unitig_27.g25145' => 'ugi', 'unitig_8.g4781' => 'ugi', 'unitig_8.g4782' => 'ugi', 'unitig_8.g4783' => 'ugi', 'vmacro00691' => 'vma', 'vmacro00692' => 'vma', 'vmacro03298' => 'vma', 'vmacro03301' => 'vma', 'vmacro04893' => 'vma', 'vmacro15694' => 'vma', 'vmacro15695' => 'vma', 'VMungo0251G2435' => 'vmu', 'VMungo0647G0012' => 'vmu', 'VMungo0647G0198' => 'vmu', 'VMungo1309G0840' => 'vmu', 'Zm00001eb025490' => 'zma', 'Zm00001eb026580' => 'zma', 'Zm00001eb085820' => 'zma', 'Zm00001eb143300' => 'zma', 'Zm00001eb225510' => 'zma', 'Zm00001eb317790' => 'zma', 'Zm00001eb364580' => 'zma', 'Zm00001eb405090' => 'zma', 'Zm00001eb413570' => 'zma', 'Zm00001eb420640' => 'zma' ) $gf_id = 'HOM05D000941' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000941' ) $data_identifier = 'HOM05D000941' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 1, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 9, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 12, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 2, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 4, 'din' => (int) 8, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 16, 'fan' => (int) 10, 'fve' => (int) 3, 'gma' => (int) 4, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 10, 'han' => (int) 2, 'cav' => (int) 12, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 2, 'lonja' => (int) 9, 'lsa' => (int) 2, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 4, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 2, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 7, 'qlo' => (int) 10, 'rch' => (int) 4, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 8, 'sas' => (int) 4, 'smo' => (int) 13, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1